GCA_001810505.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

KV801719.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	terpene	56,291	68,784

KV801741.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	T1PKS	35,916	72,592

KV801744.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 39.1	NAPAA	22,532	56,428

Region	Type	From	To	Similarity
Region 23.1	terpene	56,291	68,784
Region 36.1	T1PKS	35,916	72,592
Region 39.1	NAPAA	22,532	56,428

No secondary metabolite regions were found in these records:: KV801691.1; KV801692.1; KV801694.1; KV801696.1; KV801697.1; KV801698.1; KV801699.1; KV801700.1; KV801701.1; KV801702.1; KV801703.1; KV801704.1; KV801705.1; KV801706.1; KV801707.1; KV801708.1; KV801709.1; KV801710.1; KV801713.1; KV801715.1; KV801716.1; KV801717.1; KV801721.1; KV801722.1; KV801723.1; KV801724.1; KV801725.1; KV801727.1; KV801730.1; KV801732.1; KV801733.1; KV801735.1; KV801737.1; KV801740.1; KV801742.1; KV801743.1; KV801748.1; KV801750.1; KV801751.1; KV801752.1; KV801753.1; KV801755.1; KV801756.1

Compact view

KV801719.1 - Region 1 - terpene

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Location: 56,291 - 68,784 nt. (total: 12,494 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

KV801741.1 - Region 1 - T1PKS

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Location: 35,916 - 72,592 nt. (total: 36,677 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

NRPS/PKS domains

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 35915 - 72592:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HMPREF2748_07250

CAL_domain (66..539): pk

minowa: Acetyl-CoA

Prediction, score:

Acetyl-CoA: 14.8
NH2: 14.0
AHBA: 10.3
shikimic_acid: 8.2
fatty_acid: 7.0

HMPREF2748_07255

PKS_AT (646..929): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 58.3%

minowa: fatty_acid

Prediction, score:

fatty_acid: 112.3
Methoxymalonyl-CoA: 61.3
Methylmalonyl-CoA: 60.9
Malonyl-CoA: 41.7
trans-1,2-CPDA: 35.4
Ethylmalonyl-CoA: 32.6
Propionyl-CoA: 28.6
Isobutyryl-CoA: 23.1
2-Methylbutyryl-CoA: 16.3
CHC-CoA: 15.6
Acetyl-CoA: 13.4
inactive: 0.0
Benzoyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

KV801744.1 - Region 1 - NAPAA

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Location: 22,532 - 56,428 nt. (total: 33,897 nt) Show pHMM detection rules used

NAPAA: (AMP-binding and TIGR02353)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 22531 - 56428:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HMPREF2748_07870

AMP-binding (39..411): X

nrpys: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAESIGTVVK
Nearest Stachelhaus code(s):: Lys DAEDIGTVVK (68% 8Å match); Gln or Tyr DAESVGTVVK (68% 8Å match)
Stachelhaus code match:: 90% (moderate)